species:   Rhsol
pid:       PID0607
parent:    Rhi-milR-174
paralog:   
locus:     KB317768.1:8775-8887
matures:   ['UUUAAGGAUUAUGAAAUGGAGGCU', 'CCUGCAUAACAAGUCCAAAG']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317768.1:8775-8887

2 out of bounds
6 alignments
4 proper strand
2 stranded perfect matches

                          *********************                     *************************                    
CAAGUCCCUGGAGGAAAUCCUCCAAUUCCUGCAUAACAAGUCCAAAGCGCCCCUGUCCAUCAAACGCGCAUUUAAGGAUUAUGAAAUGGAGGCUUGCCUACUCUUCUACCAAG
........((((((....))))))...(((.(((..((((((((((((((...((.....))...)))).)))..))))).))..))).))).....................
----------------------------------------------------------------------UUUAAGGAUUAUGAAAUGGAGGCU------------------- l=24 a=0 c
---------------------------CCUGCAUAACAAGUCCAAAG------------------------------------------------------------------ l=20 a=0 c*
----------------------------------------------------------------------UUUAAGGAUUAUGAAAUGGAGGC-------------------- l=23 a=1 ma
----------------------------CUGCAUAACAAGUCCAAAG------------------------------------------------------------------ l=19 a=0 ma*

----------------------------------------------------------------------UUUAAGGAUUAUGAAAUGGAGGC-------------------- l=23 a=1 (ma)
----------------------------------------------------------------------UUUAAGGAUUAUGAgAUGGAGGC-------------------- l=23 a=1 
----------------------------------------------------------------------UUUAAGGAUUAUGAgAUGGAGGCU------------------- l=24 a=1 
-----------------------------------------------------------------------UUAAGGAUUAUGAAAUGGAGGC-------------------- l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-110110101000
fn-001
